theory.toys
Variant Calling
Genotype likelihoods and filters
Sequencing Parameters
Coverage depth:
20
x
Sequencing error rate:
0.01
True Genotype
Genotype at position:
0/0 (Homozygous Reference)
0/1 (Heterozygous)
1/1 (Homozygous Alternate)
Quality Filters
Minimum quality (QUAL):
20
Minimum depth:
10
x
Filter strand bias
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Prior Probabilities
P(0/0):
0.998
P(0/1):
0.001
P(1/1):
0.001
Note: Priors will be normalized to sum to 1
Actions
Generate New Reads
Run 100 Trials
Statistics